Stem-loop sequence mes-MIR482b

Accession

MI0037912 (change log)

Description

Manihot esculenta miR482b stem-loop

Literature search

1 open access papers mention mes-MIR482b
(1 sentences)

Stem-loop

   ---  au  a     a        ug a          -gu       -     -ca       -aaauac   aaca     
5'    ag  ag gagcu cuggaagu  u ggaaugggcg   uugggaa aaaau   uauacau       gau    gauu 
      ||  || ||||| ||||||||  | ||||||||||   ||||||| |||||   |||||||       |||    ||| a
3'    uc  uc cucga gaccuuua  a ccuuacccgc   aacccuu uuuug   auaugug       cua    cugc 
   cuu  cc  -     a        gu g          ugu       c     aac       aauuaaa   aaag     

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold04043: 391302-391458 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0037912

Mature sequence mes-miR482b

• Accession: MIMAT0045976
• Sequence: 111 - uucccaaugucgcccauuccga - 132
• Evidence: experimental; Illumina [1]

References

1. PMID:26822616 "High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs" Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN BMC Genomics. 17:85(2016).