Stem-loop sequence mes-MIR535d

Accession

MI0037917 (change log)

Description

Manihot esculenta miR535d stem-loop

Literature search

4 open access papers mention mes-MIR535d
(9 sentences)

Stem-loop

   guucccuua  --g    -    a   gu        ag  a        a   ua   uu    cu 
5'          gu   uuga caua uug  ugacgacg  ag gagcacgc ugu  gca  caug  g
            ||   |||| |||| |||  ||||||||  || |||||||| |||  |||  ||||  u
3'          ca   aacu guau aac  acugcugc  uc cucgugug aca  ugu  guac  g
   ucguguuug  aua    c    -   gu        ca  c        a   uc   ug    ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold01190: 159468-159600 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mes-MIR535d

• mes-MIR535b: scaffold01190: 166527-166640 [-]
• mes-MIR535d: scaffold01190: 159468-159600 [-]

Database links

• miRBase Tracker:MI0037917

Mature sequence mes-miR535d

• Accession: MIMAT0045981
• Sequence: 26 - uugacgacgagagagagcacg - 46
• Evidence: experimental; Illumina [1]

References

1. PMID:26822616 "High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs" Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN BMC Genomics. 17:85(2016).