Stem-loop sequence mes-MIR6445

Accession

MI0037920 (change log)

Description

Manihot esculenta miR6445 stem-loop

Literature search

1 open access papers mention mes-MIR6445
(4 sentences)

Stem-loop

   --cgccuuc   c      g    c          u            gu       ---------  uu   uu 
5'          guc cucuga gacg uguucauucc cuuccuaaaaug  uucccuu         uc  cuc  u
            ||| |||||| |||| |||||||||| ||||||||||||  |||||||         ||  |||   
3'          uag gagacu cugu auaaguaagg gaaggauuuuac  aagggaa         ag  gag  a
   guugucucu   a      a    c          -            uu       uuaaguugu  uu   uc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Cassava4): scaffold12794: 1892122-1892261 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0037920

Mature sequence mes-miR6445

• Accession: MIMAT0045984
• Sequence: 26 - uucauuccucuuccuaaaaugg - 47
• Evidence: experimental; Illumina [1]

References

1. PMID:26822616 "High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs" Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN BMC Genomics. 17:85(2016).