Stem-loop mes-MIR6445

Accession

MI0037920

Description

Manihot esculenta mes-MIR6445 precursor miRNA

Literature search

1 open access papers mention mes-MIR6445
(4 sentences)

Sequence

cgccuucgucccucugaggacgcugUUCAUUCCUCUUCCUAAAAUGGuuucccuuucuucucuuuacugaguugauguugaauuaagggaauucauuuuaggaagggaaugaauacugucaucagagagauucucuguug
.......(((.((((((.((((.((((((((((.(((((((((((((.(((((((((..(((......)))..)).........))))))).))))))))))))))))))))))).)))).)))))).))).........

Structure

--cgccuuc   c      g    c          U             u       ---------  uu   uu 
         guc cucuga gacg ugUUCAUUCC CUUCCUAAAAUGG uucccuu         uc  cuc  u
         ||| |||||| |||| |||||||||| ||||||||||||| |||||||         ||  |||   
         uag gagacu cugu auaaguaagg gaaggauuuuacu aagggaa         ag  gag  a
guugucucu   a      a    c          -             u       uuaaguugu  uu   uc 

Annotation confidence Low

Genome context

scaffold12794: 1892122-1892261 [-]

Mature mes-miR6445

• Accession: MIMAT0045984
• Description: Manihot esculenta mes-miR6445 mature miRNA
• Sequence: 26 - UUCAUUCCUCUUCCUAAAAUGG - 47
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26822616
   High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
   Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
   BMC Genomics (2016) 17:85