Stem-loop mdo-mir-133b

Accession

MI0040828

Description

Monodelphis domestica mdo-mir-133b precursor miRNA

Sequence

1261 reads, 18 reads per million, 5 experiments

GCUGGUCAAACGGAACCAAGUCcgucugacugagaggUUUGGUCCCCUUCAACCAGCU
((((((..((.((.((((((.((.(((.....))))))))))).)).))..)))))).

Structure

-      CA  C  A      U  g   g 
 GCUGGU  AA GG ACCAAG Cc ucu a
 ||||||  || || |||||| || ||| c
 CGACCA  UU CC UGGUUU gg aga u
U      AC  C  C      -  -   g 

Annotation confidence Low

Genome context

chr2: 300507722-300507779 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-133b

Mature mdo-miR-133b-5p

• Accession: MIMAT0050179
• Description: Monodelphis domestica mdo-miR-133b-5p mature miRNA
• Sequence: 1 - GCUGGUCAAACGGAACCAAGUC - 22
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-133b-3p

• Accession: MIMAT0050180
• Description: Monodelphis domestica mdo-miR-133b-3p mature miRNA
• Sequence: 38 - UUUGGUCCCCUUCAACCAGCU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29079676
   Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
   "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
   Genome Res (2017) 12:1961-1973