Accession
MI0000009
Description
Caenorhabditis elegans
cel-mir-38 precursor miRNA
Literature search
2 open access papers mention cel-mir-38
(6 sentences)
(6 sentences)
Sequence
75473
reads,
806
reads per million, 16 experiments
gugagccagguccuguUCCGGUUUUUUCCGUGGUGAUAacgcauccaaaagucucuaUCACCGGGAGAAAAACUGGAGUaggaccugugacucau
(((((((((((((((((((((((((((.(.((((((((..((........))...)))))))).).))))))))))))))))))))).).)))))
(((((((((((((((((((((((((((.(.((((((((..((........))...)))))))).).))))))))))))))))))))).).)))))
Structure
- - C G -ac auc
gugag c cagguccuguUCCGGUUUUUU C UGGUGAUA gc c
||||| | ||||||||||||||||||||| | |||||||| ||
uacuc g guccaggaUGAGGUCAAAAAG G GCCACUau ug a
a u A G cuc aaa
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chrII: 11537933-11538027 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from cel-mir-38
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-38-3p
| Accession | MIMAT0000009 |
| Description | Caenorhabditis elegans cel-miR-38-3p mature miRNA |
| Sequence | 58 - UCACCGGGAGAAAAACUGGAGU - 79 |
| Evidence |
experimental
cloned [1-3], Northern [1], 454 [4], Illumina [5,7], CLIPseq [6] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-38-5p
| Accession | MIMAT0020305 |
| Description | Caenorhabditis elegans cel-miR-38-5p mature miRNA |
| Sequence | 17 - UCCGGUUUUUUCCGUGGUGAUA - 38 |
| Evidence |
experimental
Illumina [7] |
| Database links |
|
References
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