Accession
MI0000010
Description
Caenorhabditis elegans
cel-mir-39 precursor miRNA mir-39
Gene
family?
family?
RF04300;
mir-39
Literature search
4 open access papers mention cel-mir-39
(17 sentences)
(17 sentences)
Sequence
193148
reads,
1492
reads per million, 16 experiments
uauaccgagagcccAGCUGAUUUCGUCUUGGUAAUAagcucgucauugagauuaUCACCGGGUGUAAAUCAGCUUGgcucugguguc
.(((((.((((((.(((((((((((.((((((.((((.((((....)))).)))).)))))))).))))))))).))))))))))).
.(((((.((((((.(((((((((((.((((((.((((.((((....)))).)))).)))))))).))))))))).))))))))))).
Structure
u g c - U A g u auacc agagcc AGCUGAUUU CG CUUGGU AUAa cucg c ||||| |||||| ||||||||| || |||||| |||| |||| ugugg ucucgG UCGACUAAA GU GGGCCA Uauu gagu a c - U U - C a u
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
The excised miRNA sequence was initially predicted [1], and confirmed later by sequencing [3].
Genome context
chrII: 11538089-11538175 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from cel-mir-39
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-39-3p
| Accession | MIMAT0000010 |
| Description | Caenorhabditis elegans cel-miR-39-3p mature miRNA |
| Sequence | 55 - UCACCGGGUGUAAAUCAGCUUG - 76 |
| Evidence |
experimental
Northern [1], cloned [2], 454 [3], Illumina [4,6], CLIPseq [5] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-39-5p
| Accession | MIMAT0020306 |
| Description | Caenorhabditis elegans cel-miR-39-5p mature miRNA |
| Sequence | 15 - AGCUGAUUUCGUCUUGGUAAUA - 36 |
| Evidence |
experimental
Illumina [6] |
| Database links |
|
