Accession
MI0000014
Description
Caenorhabditis elegans
cel-mir-43 precursor miRNA mir-43
Gene
family?
family?
RF00795;
mir-43
Literature search
2 open access papers mention cel-mir-43
(4 sentences)
(4 sentences)
Sequence
4593
reads,
58
reads per million, 14 experiments
uauuggcacuagucgcccguGACAUCAAGAAACUAGUGAUUAUGccaaaccacagggacaUAUCACAGUUUACUUGCUGUCGCgggcggugcugaguu
..(((((((....(((((((((((.(((((((((.(((((.(((((.........)).))))))))))))).)))).))))))))))))))))))...
..(((((((....(((((((((((.(((((((((.(((((.(((((.........)).))))))))))))).)))).))))))))))))))))))...
Structure
-ua uagu U - A U - aaa uuggcac cgcccguGACA CAAG AAACU GUGAU AUG cc c ||||||| ||||||||||| |||| ||||| ||||| ||| || c agucgug gcgggCGCUGU GUUC UUUGA CACUA Uac gg a uug ---- C A - - a gac
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chrII: 11889910-11890007 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cel-mir-43
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-43-3p
| Accession | MIMAT0000014 |
| Description | Caenorhabditis elegans cel-miR-43-3p mature miRNA |
| Sequence | 61 - UAUCACAGUUUACUUGCUGUCGC - 83 |
| Evidence |
experimental
cloned [1-4], Northern [1], 454 [5], Illumina [6-7] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-43-5p
| Accession | MIMAT0020308 |
| Description | Caenorhabditis elegans cel-miR-43-5p mature miRNA |
| Sequence | 21 - GACAUCAAGAAACUAGUGAUUAUG - 44 |
| Evidence |
experimental
Illumina [7] |
| Database links |
|
