Accession
MI0000019
Description
Caenorhabditis elegans
cel-mir-48 precursor miRNA mir-48
Gene
family?
family?
RF00796;
mir-48
Literature search
24 open access papers mention cel-mir-48
(145 sentences)
(145 sentences)
Sequence
19881168
reads,
61987
reads per million, 16 experiments
aaacucccgggaacuUGAGGUAGGCUCAGUAGAUGCGAauugaacgguaucucACAUCCACCAGCCUAGCUCGCAuucccagaguuuacgguauuguu
((((((..(((((..((((.((((((..((.((((.((..((.....))..)).)))).)).)))))).))))..))))).))))))...........
((((((..(((((..((((.((((((..((.((((.((..((.....))..)).)))).)).)))))).))))..))))).))))))...........
Structure
----------- cc cu G CA A C au a
aaacuc gggaa UGAG UAGGCU GU GAUG GA ug a
|||||| ||||| |||| |||||| || |||| || || c
uuugag cccuu GCUC AUCCGA CA CUAC cu au g
uuguuauggca -a AC G -C C A cu g
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chrV: 14364412-14364509 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-48
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-48-5p
| Accession | MIMAT0000019 |
| Description | Caenorhabditis elegans cel-miR-48-5p mature miRNA |
| Sequence | 16 - UGAGGUAGGCUCAGUAGAUGCGA - 38 |
| Evidence |
experimental
cloned [1-3], 454 [4], Illumina [5], CLIPseq [6] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-48-3p
| Accession | MIMAT0015098 |
| Description | Caenorhabditis elegans cel-miR-48-3p mature miRNA |
| Sequence | 54 - ACAUCCACCAGCCUAGCUCGCA - 75 |
| Evidence |
experimental
CLIPseq [6] |
| Database links |
|
References
|
