Accession
MI0000024
Description
Caenorhabditis elegans
cel-mir-53 precursor miRNA mir-52
Gene
family?
family?
RF00734;
mir-52
Literature search
3 open access papers mention cel-mir-53
(9 sentences)
(9 sentences)
Sequence
18015
reads,
344
reads per million, 16 experiments
ccgauucugacagucCACCCGUACAUUUGUUUCCGUGCUugacuucaaagcucaauCACGGCACAAUAUAUGGGUCGCcagucauuguagucggaauuu
(((((((((((.(.(.(((((((...((((..(((((.((((((....)).)))).))))).))))..))))))).).).))))..).)))))).....
(((((((((((.(.(.(((((((...((((..(((((.((((((....)).)))).))))).))))..))))))).).).))))..).)))))).....
Structure
----- - -- a u C CAU UU C - u
ccgauu c ugac g c ACCCGUA UUGU CCGUG Uuga cu c
|||||| | |||| | | ||||||| |||| ||||| |||| ||
ggcuga g acug c G UGGGUAU AACA GGCAC aacu ga a
uuuaa u uu a C C -AU -C u c a
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chrIV: 11027593-11027691 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-53
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-53-5p
| Accession | MIMAT0000024 |
| Description | Caenorhabditis elegans cel-miR-53-5p mature miRNA |
| Sequence | 16 - CACCCGUACAUUUGUUUCCGUGCU - 39 |
| Evidence |
experimental
cloned [1-2], 454 [3], Illumina [4,6], CLIPseq [5] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-53-3p
| Accession | MIMAT0020312 |
| Description | Caenorhabditis elegans cel-miR-53-3p mature miRNA |
| Sequence | 57 - CACGGCACAAUAUAUGGGUCGC - 78 |
| Evidence |
experimental
Illumina [6] |
| Database links |
|
