Accession
MI0000025
Description
Caenorhabditis elegans
cel-mir-54 precursor miRNA mir-54
Gene
family?
family?
RF04082;
mir-54
Literature search
1 open access papers mention cel-mir-54
(9 sentences)
(9 sentences)
Sequence
211862
reads,
3196
reads per million, 16 experiments
gugagucgcgcucugacuAGGAUAUGAGACGACGAGAACAuugcuuuuuuaaaagacuugUACCCGUAAUCUUCAUAAUCCGAGucagggcuagcugac
((.(((...(((((((((.((((((((((..(((.(.(((...((((....))))...))).).)))..)).)))).)))).)))))))))..))).))
((.(((...(((((((((.((((((((((..(((.(.(((...((((....))))...))).).)))..)).)))).)))).)))))))))..))).))
Structure
g cgc A - - CG A A uug u gu agu gcucugacu GGAU AUGA GA ACG G ACA cuuu u || ||| ||||||||| |||| |||| || ||| | ||| |||| ca ucg cgggacuGA CCUA UACU CU UGC C Ugu gaaa u g -au G A U AA C A uca a
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chrX: 13144996-13145094 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cel-mir-54
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-54-3p
| Accession | MIMAT0000025 |
| Description | Caenorhabditis elegans cel-miR-54-3p mature miRNA |
| Sequence | 61 - UACCCGUAAUCUUCAUAAUCCGAG - 84 |
| Evidence |
experimental
cloned [1-3], 454 [4], Illumina [5,7], CLIPseq [6] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-54-5p
| Accession | MIMAT0020773 |
| Description | Caenorhabditis elegans cel-miR-54-5p mature miRNA |
| Sequence | 19 - AGGAUAUGAGACGACGAGAACA - 40 |
| Evidence |
experimental
Illumina [7] |
| Database links |
|
References
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