Accession
MI0000026
Description
Caenorhabditis elegans
cel-mir-55 precursor miRNA mir-55
Gene
family?
family?
RF00826;
mir-55
Literature search
3 open access papers mention cel-mir-55
(8 sentences)
(8 sentences)
Sequence
421729
reads,
3706
reads per million, 16 experiments
agauuuggaacuuaaugggacuCGGCAGAAACCUAUCGGUUAUAcuuuuuggauaugcuaUACCCGUAUAAGUUUCUGCUGAGccccuuauuccuguu
......((((..(((.(((.((((((((((((.((((((.(((((...........).)))).))).))).))))))))))))))).)))))))....
......((((..(((.(((.((((((((((((.((((((.(((((...........).)))).))).))).))))))))))))))).)))))))....
Structure
agauuu cu u a C - U - uuuu
ggaa uaa ggg cuCGGCAGAAAC UAU CGG UAUA c u
|||| ||| ||| |||||||||||| ||| ||| |||| | g
ccuu auu ccc GAGUCGUCUUUG AUA GCC AUau g g
--uugu -- c - A U C c uaua
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chrX: 13144827-13144924 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cel-mir-55
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-55-3p
| Accession | MIMAT0000026 |
| Description | Caenorhabditis elegans cel-miR-55-3p mature miRNA |
| Sequence | 61 - UACCCGUAUAAGUUUCUGCUGAG - 83 |
| Evidence |
experimental
cloned [1-3], 454 [4], Illumina [5-6] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-55-5p
| Accession | MIMAT0020313 |
| Description | Caenorhabditis elegans cel-miR-55-5p mature miRNA |
| Sequence | 23 - CGGCAGAAACCUAUCGGUUAUA - 44 |
| Evidence |
experimental
Illumina [6] |
| Database links |
|
