Stem-loop cel-mir-55

Accession

MI0000026

Description

Caenorhabditis elegans cel-mir-55 precursor miRNA mir-55

Gene
family

RF00826; mir-55

Literature search

3 open access papers mention cel-mir-55
(8 sentences)

Sequence

421725 reads, 3142 reads per million, 16 experiments

agauuuggaacuuaaugggacuCGGCAGAAACCUAUCGGUUAUAcuuuuuggauaugcuaUACCCGUAUAAGUUUCUGCUGAGccccuuauuccuguu
......((((..(((.(((.((((((((((((.((((((.(((((...........).)))).))).))).))))))))))))))).)))))))....

Structure

agauuu    cu   u   a            C   -   U    - uuuu 
      ggaa  uaa ggg cuCGGCAGAAAC UAU CGG UAUA c    u
      ||||  ||| ||| |||||||||||| ||| ||| |||| |    g
      ccuu  auu ccc GAGUCGUCUUUG AUA GCC AUau g    g
--uugu    --   c   -            A   U   C    c uaua 

Annotation confidence Medium

Genome context

chrX: 13144827-13144924 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cel-mir-55

Mature cel-miR-55-3p

• Accession: MIMAT0000026
• Description: Caenorhabditis elegans cel-miR-55-3p mature miRNA
• Sequence: 61 - UACCCGUAUAAGUUUCUGCUGAG - 83
• Evidence: experimental ; cloned [1-3], 454 [4], Illumina [5-6]

Mature cel-miR-55-5p

• Accession: MIMAT0020313
• Description: Caenorhabditis elegans cel-miR-55-5p mature miRNA
• Sequence: 23 - CGGCAGAAACCUAUCGGUUAUA - 44
• Evidence: experimental ; Illumina [6]

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862


2. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


3. PubMed ID: 12747828
   MicroRNAs and other tiny endogenous RNAs in C. elegans
   "Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D"
   "Curr Biol (2003) 13:807-818


4. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


5. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


6. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577