Accession
MI0000027
Description
Caenorhabditis elegans
cel-mir-56 precursor miRNA mir-56
Gene
family?
family?
RF02214;
mir-56
Literature search
5 open access papers mention cel-mir-56
(7 sentences)
(7 sentences)
Sequence
476767
reads,
2618
reads per million, 16 experiments
gagccagugucuguucuUGGCGGAUCCAUUUUGGGUUGUACCucauccuaaauuugacggUACCCGUAAUGUUUCCGCUGAGaaccgacugugcacc
..((((((....((((((((((((..((((.(((((...((((((.........))).)))))))).))))..))))))))))))..)))).))...
..((((((....((((((((((((..((((.(((((...((((((.........))).)))))))).))))..))))))))))))..)))).))...
Structure
-ga - gucu UC U UGU - ucc gc cagu guucuUGGCGGA CAUU UGGGU ACC uca u || |||| |||||||||||| |||| ||||| ||| ||| a cg guca caaGAGUCGCCU GUAA GCCCA Ugg agu a cca u --gc UU U --- c uua
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chrX: 13144691-13144787 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cel-mir-56
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-56-5p
| Accession | MIMAT0000027 |
| Description | Caenorhabditis elegans cel-miR-56-5p mature miRNA |
| Sequence | 18 - UGGCGGAUCCAUUUUGGGUUGUACC - 42 |
| Evidence |
experimental
cloned [1], CLIPseq [7] |
| Database links |
|
Mature cel-miR-56-3p
| Accession | MIMAT0000028 |
| Description | Caenorhabditis elegans cel-miR-56-3p mature miRNA |
| Sequence | 61 - UACCCGUAAUGUUUCCGCUGAG - 82 |
| Evidence |
experimental
cloned [1-3], Northern [1], PCR [4], 454 [5], Illumina [6], CLIPseq [7] |
| Database links |
|
| Predicted targets |
|
References
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