Accession
MI0000059
Description
Caenorhabditis elegans
cel-mir-90 precursor miRNA mir-90
Gene
family?
family?
RF00785;
mir-90
Sequence
71260
reads,
480
reads per million, 16 experiments
gggcgccauuucgagCGGCUUUCAACGACGAUAUCAACcgacaacucacacuuuugcguguUGAUAUGUUGUUUGAAUGCCCCUugaauuggaugcca
.(((((((.((((((.(((.(((((((((.((((((((((.(((.........))))).)))))))))))).))))).))).)))))).))).)))).
.(((((((.((((((.(((.(((((((((.((((((((((.(((.........))))).)))))))))))).))))).))).)))))).))).)))).
Structure
g - u C U - G - a cuc ggcg cca uucgag GGC UUCAA CGAC AUAUCAAC cg caa a |||| ||| |||||| ||| ||||| |||| |||||||| || ||| c ccgu ggu aaguUC CCG AAGUU GUUG UAUAGUug gc guu a a a u C U U - u - uuc
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
mir-90 is has found to be most abundant in the L1 stage of larval development in Caenorhabditis elegans [1]. The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [4].
Genome context
chrIII: 8873987-8874084 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cel-mir-90
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-90-3p
| Accession | MIMAT0000061 |
| Description | Caenorhabditis elegans cel-miR-90-3p mature miRNA |
| Sequence | 62 - UGAUAUGUUGUUUGAAUGCCCCU - 84 |
| Evidence |
experimental
cloned [1-3], 454 [4], Illumina [5,7], CLIPseq [6] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-90-5p
| Accession | MIMAT0020326 |
| Description | Caenorhabditis elegans cel-miR-90-5p mature miRNA |
| Sequence | 16 - CGGCUUUCAACGACGAUAUCAAC - 38 |
| Evidence |
experimental
Illumina [7] |
| Database links |
|
References
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