Stem-loop mmu-mir-140

Accession

MI0000165

Symbol

MGI: Mir140

Description

Mus musculus mmu-mir-140 precursor miRNA mir-140

Gene
family

RF00678; mir-140

Literature search

88 open access papers mention mmu-mir-140
(916 sentences)

Sequence

7001290 reads, 16032 reads per million, 107 experiments

ccugcCAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGGacagg
((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).))))

Structure

    -  A             A       u  c  c 
ccug cC GUGGUUUUACCCU UGGUAGg ua gu  
|||| || ||||||||||||| ||||||| || || a
ggac GG CACCAAGAUGGGA ACCAUcu gu cg  
    a  -             C       u  -  u 

Annotation confidence Medium

Genome context

chr8: 107551244-107551313 [+]

Mature mmu-miR-140-5p

• Accession: MIMAT0000151
• Description: Mus musculus mmu-miR-140-5p mature miRNA
• Sequence: 6 - CAGUGGUUUUACCCUAUGGUAG - 27
• Evidence: experimental ; cloned [1-4], Illumina [5-6]

Mature mmu-miR-140-3p

• Accession: MIMAT0000152
• Description: Mus musculus mmu-miR-140-3p mature miRNA
• Sequence: 45 - UACCACAGGGUAGAACCACGG - 65
• Evidence: experimental ; cloned [2,4], Illumina [5-6]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


3. PubMed ID: 15538371
   A pancreatic islet-specific microRNA regulates insulin secretion
   "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
   "Nature (2004) 432:226-230


4. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


5. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


6. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009