Accession
MI0000203
Description
Arabidopsis thaliana
ath-MIR166c precursor miRNA
Literature search
37 open access papers mention ath-MIR166c
(310 sentences)
(310 sentences)
Sequence
gcgauuuaguguugagaggauuguugucuggcucgaggucaugaagaagagaaucacucgaauuaauuuggaagaacaaauuaagaaaacccuagaugauucUCGGACCAGGCUUCAUUCCCCcuaaccuacuuaucgc
(((((.(((.((((.(.(((.((..((((((.((((((((((..((..(((.....)))...((((((((......)))))))).......))..)))).)))))).))))))..)).))).).)))))))...)))))
(((((.(((.((((.(.(((.((..((((((.((((((((((..((..(((.....)))...((((((((......)))))))).......))..)))).)))))).))))))..)).))).).)))))))...)))))
Structure
--u u a a u uu c - ga aagagaaucacucgaa ga
gcgau uag guug g gga ug gucugg ucgagg ucau ag uuaauuug a
||||| ||| |||| | ||| || |||||| |||||| |||| || ||||||||
cgcua auc caau C CCU AC CGGACC GGCUcu agua uc aauuaaac g
uuc - c C U UU A u ga ---------ccaaaag aa
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
MIR166c, like miR165, is thought to target mRNAs coding for HD-Zip transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that regulate axillary meristem initiation and leaf development [2].
Genome context
chr5: 2838635-2838773 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR166c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR166c
| Accession | MIMAT0000191 |
| Description | Arabidopsis thaliana ath-miR166c mature miRNA |
| Sequence | 103 - UCGGACCAGGCUUCAUUCCCC - 123 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
References
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