miRBase entry: cel-mir-230

Stem-loop cel-mir-230


Accession
MI0000305
Description
Caenorhabditis elegans cel-mir-230 precursor miRNA mir-230
Gene
family?
RF00851; mir-230

Literature search
2 open access papers mention cel-mir-230
(3 sentences)

Sequence

125082 reads, 701 reads per million, 14 experiments
uugauguaaugccgucACUUGGUCGGCGAUUUAAUAUUAucagaacauaggaaauuguuaGUAUUAGUUGUGCGACCAGGAGAcgguauucgcauauu
...(((((((((((((.((((((((((((((.(((((((.(((...........))).))))))))))))).)))))))).))))))))).))))...

Structure
uug    -         A        -      U       u   aaca 
   augu aaugccguc CUUGGUCG GCGAUU AAUAUUA cag    u
   |||| ||||||||| |||||||| |||||| ||||||| |||    a
   uacg uuauggcAG GGACCAGC UGUUGA UUAUGau guu    g
uua    c         A        G      -       u   aaag 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chrX: 5803892-5803989 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-230
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-230-5p

Accession MIMAT0015113
Description Caenorhabditis elegans cel-miR-230-5p mature miRNA
Sequence 17 - ACUUGGUCGGCGAUUUAAUAUUA - 39
Evidence experimental
CLIPseq [5]
Database links

Mature cel-miR-230-3p

Accession MIMAT0000285
Description Caenorhabditis elegans cel-miR-230-3p mature miRNA
Sequence 61 - GUAUUAGUUGUGCGACCAGGAGA - 83
Evidence experimental
cloned [1], Northern [1], 454 [3], Illumina [4], CLIPseq [5]
Database links
Predicted targets

References

  1. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008

  2. PubMed ID: 12747828
    MicroRNAs and other tiny endogenous RNAs in C. elegans
    "Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D"
    "Curr Biol (2003) 13:807-818

  3. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  4. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  5. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179