Stem-loop cel-mir-239a

Accession

MI0000314

Description

Caenorhabditis elegans cel-mir-239a precursor miRNA mir-239

Gene
family

RF00713; mir-239

Literature search

5 open access papers mention cel-mir-239a
(49 sentences)

Sequence

31668 reads, 700 reads per million, 15 experiments

uacacguuugcaauuUUUGUACUACACAUAGGUACUGGacaauuuucaaaauauauccAGUGUCUAGUCUAGUGCAAACAuugcucgguguuguuuga
.((((....(((((.(((((((((.((.(((((((((((................))))))))))))).))))))))).)))))...)))).......

Structure

------u    guuu     u         C  A           caauuuu 
       acac    gcaau UUUGUACUA AC UAGGUACUGGa       c
       ||||    ||||| ||||||||| || |||||||||||        
       ugug    cguuA AAACGUGAU UG AUCUGUGAccu       a
aguuugu    -gcu     C         C  -           auauaaa 

Annotation confidence Medium

Genome context

chrX: 11792445-11792542 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-239a

Mature cel-miR-239a-5p

• Accession: MIMAT0000294
• Description: Caenorhabditis elegans cel-miR-239a-5p mature miRNA
• Sequence: 16 - UUUGUACUACACAUAGGUACUGG - 38
• Evidence: experimental ; cloned [1,3], Northern [1], Illumina [4,6], CLIPseq [5]

Mature cel-miR-239a-3p

• Accession: MIMAT0020334
• Description: Caenorhabditis elegans cel-miR-239a-3p mature miRNA
• Sequence: 59 - AGUGUCUAGUCUAGUGCAAACA - 80
• Evidence: experimental ; Illumina [6]

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


2. PubMed ID: 12747828
   MicroRNAs and other tiny endogenous RNAs in C. elegans
   "Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D"
   "Curr Biol (2003) 13:807-818


3. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


4. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


5. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


6. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577