Accession
MI0000316
Description
Caenorhabditis elegans
cel-mir-240 precursor miRNA mir-240
Gene
family?
family?
RF00804;
mir-240
Literature search
7 open access papers mention cel-mir-240
(29 sentences)
(29 sentences)
Sequence
19155
reads,
132
reads per million, 13 experiments
uuguuagaaacuuuuucaaauCGAGGAUUUUGAGACUAGAAUGCuugaauuguacuagcaUACUGGCCCCCAAAUCUUCGCUuagaaauacaguuca
......(((....((((.((.(((((((((.(.(.((((.(((((...........))))).)))).).).))))))))).)).)))).....))).
......(((....((((.((.(((((((((.(.(.((((.(((((...........))))).)))).).).))))))))).)).)))).....))).
Structure
uuguua -acuu a u U A A A ugaa
gaa uuuc aa CGAGGAUUU G G CUAG AUGCu u
||| |||| || ||||||||| | | |||| ||||| u
cuu aaag uU GCUUCUAAA C C GGUC Uacga g
-----a gacau a C C C C A ucau
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chrX: 7882622-7882718 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cel-mir-240
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-240-5p
| Accession | MIMAT0015116 |
| Description | Caenorhabditis elegans cel-miR-240-5p mature miRNA |
| Sequence | 22 - CGAGGAUUUUGAGACUAGAAUGC - 44 |
| Evidence |
experimental
CLIPseq [4], Illumina [5] |
| Database links |
|
Mature cel-miR-240-3p
| Accession | MIMAT0000296 |
| Description | Caenorhabditis elegans cel-miR-240-3p mature miRNA |
| Sequence | 61 - UACUGGCCCCCAAAUCUUCGCU - 82 |
| Evidence |
experimental
cloned [1-2], Northern [1], Illumina [3,5], CLIPseq [4] |
| Database links |
|
| Predicted targets |
|
