Stem-loop cel-mir-241

Accession

MI0000317

Description

Caenorhabditis elegans cel-mir-241 precursor miRNA mir-241

Gene
family

RF00809; mir-241

Literature search

27 open access papers mention cel-mir-241
(121 sentences)

Sequence

364577 reads, 1598 reads per million, 13 experiments

cgggggugucaaaguUGAGGUAGGUGCGAGAAAUGAcggcauccauauaguaaucguucAUUGUCUCUCAGCUGCUUCAUCugugacauggcuacg
..((.((((((.((.((((((((.((.((((((((((((...(......)...))).))))).)))).)).)))))))).)).))))))..))...

Structure

-cg  -g      a  u        G  C    -     -   cau ca 
   gg  guguca ag UGAGGUAG UG GAGA AAUGA cgg   c  u
   ||  |||||| || |||||||| || |||| ||||| |||   |   
   uc  uacagu uC ACUUCGUC AC CUCU UUAcu gcu   g  a
gca  gg      g  U        G  U    G     u   aau au 

Annotation confidence Medium

Genome context

chrV: 14366188-14366283 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-241

Mature cel-miR-241-5p

• Accession: MIMAT0000297
• Description: Caenorhabditis elegans cel-miR-241-5p mature miRNA
• Sequence: 16 - UGAGGUAGGUGCGAGAAAUGA - 36
• Evidence: experimental ; cloned [1-2], Northern [1], Illumina [3,5], CLIPseq [4]

Mature cel-miR-241-3p

• Accession: MIMAT0020335
• Description: Caenorhabditis elegans cel-miR-241-3p mature miRNA
• Sequence: 60 - AUUGUCUCUCAGCUGCUUCAUC - 81
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


2. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


3. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


4. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


5. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577