Stem-loop cel-mir-243

Accession

MI0000319

Description

Caenorhabditis elegans cel-mir-243 precursor miRNA

Literature search

4 open access papers mention cel-mir-243
(56 sentences)

Sequence

58257 reads, 214 reads per million, 15 experiments

uguucacgcauaagccugaUAUCUCGGUGCGAUCGUACcguaucgcucacacuuagauuaCGGUACGAUCGCGGCGGGAUAUCagguacgugauugga
..((((..(((..(((((((((((((.(((((((((((((((((...........)).))))))))))))))).)))))))))))))..)))..))))

Structure

ug    cg   aa             G               -  gcuc 
  uuca  cau  gccugaUAUCUCG UGCGAUCGUACcgua uc    a
  ||||  |||  ||||||||||||| ||||||||||||||| ||    c
  aggu  gug  uggaCUAUAGGGC GCGCUAGCAUGGCau ag    a
--    ua   ca             G               u  auuc 

Annotation confidence Medium

Genome context

chrIV: 4450779-4450876 [+]

Mature cel-miR-243-5p

• Accession: MIMAT0015117
• Description: Caenorhabditis elegans cel-miR-243-5p mature miRNA
• Sequence: 20 - UAUCUCGGUGCGAUCGUAC - 38
• Evidence: experimental ; CLIPseq [4]

Mature cel-miR-243-3p

• Accession: MIMAT0000299
• Description: Caenorhabditis elegans cel-miR-243-3p mature miRNA
• Sequence: 61 - CGGUACGAUCGCGGCGGGAUAUC - 83
• Evidence: experimental ; cloned [1-2], Northern [1], Illumina [3], CLIPseq [4]

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


2. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


3. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


4. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179