Stem-loop cel-mir-244

Accession

MI0000320

Description

Caenorhabditis elegans cel-mir-244 precursor miRNA mir-244

Gene
family

RF00815; mir-244

Literature search

1 open access papers mention cel-mir-244
(3 sentences)

Sequence

7723 reads, 464 reads per million, 15 experiments

cuccauaucucaaucUCUUUGGUUGUACAAAGUGGUAUGgcucaucgaauaagcacaUACUGCUUUUCAGCUAAAGGAauugagauuuuguaggcuuuu
((.((.((((((((.((((((((((...((((((((((((((.........))).))))))))))).)))))))))).))))))))..)).))......

Structure

------  c  -u        c          UAC           -   cau 
      cu ca  aucucaau UCUUUGGUUG   AAAGUGGUAUG gcu   c
      || ||  |||||||| ||||||||||   ||||||||||| |||   g
      ga gu  uagaguua GGAAAUCGAC   UUUCGUCAUac cga   a
uuuucg  u  uu        A          --U           a   aua 

Annotation confidence High

Genome context

chrI: 4684316-4684414 [-]

Mature cel-miR-244-5p

• Accession: MIMAT0000300
• Description: Caenorhabditis elegans cel-miR-244-5p mature miRNA
• Sequence: 16 - UCUUUGGUUGUACAAAGUGGUAUG - 39
• Evidence: experimental ; cloned [1-2], Northern [1], Illumina [3], CLIPseq [4]

Mature cel-miR-244-3p

• Accession: MIMAT0015118
• Description: Caenorhabditis elegans cel-miR-244-3p mature miRNA
• Sequence: 58 - UACUGCUUUUCAGCUAAAGGA - 78
• Evidence: experimental ; CLIPseq [4]

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


2. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


3. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


4. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179