Accession
MI0000322
Description
Caenorhabditis elegans
cel-mir-246 precursor miRNA mir-246
Gene
family?
family?
RF00819;
mir-246
Literature search
6 open access papers mention cel-mir-246
(37 sentences)
(37 sentences)
Sequence
48838
reads,
423
reads per million, 12 experiments
aucugaauuauaaaacauCGCCUAACCGUUGUCAUGUAAUAuuucccagagaaaaugauaUUACAUGUUUCGGGUAGGAGCuguucaaacuuuggac
.((((((......((((.(.((((.(((....(((((((((((.............)))))))))))...))).)))).).)))).....)))))).
.((((((......((((.(.((((.(((....(((((((((((.............)))))))))))...))).)))).).)))).....)))))).
Structure
a uuauaa u G A UUGU uccca ucugaa aaca C CCUA CCG CAUGUAAUAuu g |||||| |||| | |||| ||| ||||||||||| a agguuu uugu G GGAU GGC GUACAUUauag g c -caaac C A G -UUU uaaaa
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2].
Genome context
chrIV: 10940134-10940230 [+]
Database links
Mature cel-miR-246-3p
| Accession | MIMAT0000302 |
| Description | Caenorhabditis elegans cel-miR-246-3p mature miRNA |
| Sequence | 61 - UUACAUGUUUCGGGUAGGAGC - 81 |
| Evidence |
experimental
cloned [1-2], Northern [1], Illumina [3,5], CLIPseq [4] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-246-5p
| Accession | MIMAT0020337 |
| Description | Caenorhabditis elegans cel-miR-246-5p mature miRNA |
| Sequence | 19 - CGCCUAACCGUUGUCAUGUAAUA - 41 |
| Evidence |
experimental
Illumina [5] |
| Database links |
|
