Accession
MI0000323
Description
Caenorhabditis elegans
cel-mir-247 precursor miRNA mir-247
Gene
family?
family?
RF03331;
mir-247
Literature search
1 open access papers mention cel-mir-247
(4 sentences)
(4 sentences)
Sequence
54
reads,
8
reads per million, 10 experiments
auuaccagcuauuuuccaagUAGAGAAAAGUUUCUAAUUACCcaucaugcacaaauguggUGACUAGAGCCUAUUCUCUUCUuggaaaaguggcgacu
.......(((((((((((((.((((((.((.(((((.(((((...(((......))).))))).))))).)).)))))).))))).))))))))....
.......(((((((((((((.((((((.((.(((((.(((((...(((......))).))))).))))).)).)))))).))))).))))))))....
Structure
auuacca - U A U A cau gc
gcuauuuu ccaag AGAGAA AG UUCUA UUACC cau a
|||||||| ||||| |||||| || ||||| ||||| |||
cggugaaa gguUC UCUCUU UC GAGAU AGUgg gua c
---ucag a U A C C --u aa
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2].
Genome context
chrX: 4756971-4757068 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-247
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-247-5p
| Accession | MIMAT0015119 |
| Description | Caenorhabditis elegans cel-miR-247-5p mature miRNA |
| Sequence | 21 - UAGAGAAAAGUUUCUAAUUACC - 42 |
| Evidence |
experimental
CLIPseq [4] |
| Database links |
|
Mature cel-miR-247-3p
| Accession | MIMAT0000303 |
| Description | Caenorhabditis elegans cel-miR-247-3p mature miRNA |
| Sequence | 61 - UGACUAGAGCCUAUUCUCUUCU - 82 |
| Evidence |
experimental
cloned [1-2], Northern [1], Illumina [3], CLIPseq [4] |
| Database links |
|
| Predicted targets |
|
References
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