Accession
MI0000325
Description
Caenorhabditis elegans
cel-mir-249 precursor miRNA mir-249
Gene
family?
family?
RF00821;
mir-249
Literature search
1 open access papers mention cel-mir-249
(6 sentences)
(6 sentences)
Sequence
556
reads,
6
reads per million, 14 experiments
auacucuugaacgacuAGCAACGCACAAACGUCUUCUGUGcgacaacaucugaauguuugUCACAGGACUUUUGAGCGUUGCCagucgaaagaggaa
...(((((...(((((.(((((((.((((.(((..((((((((..((((....))))))).)))))))).)))).))))))).))))).)))))...
...(((((...(((((.(((((((.((((.(((..((((((((..((((....))))))).)))))))).)))).))))))).))))).)))))...
Structure
aua gaa A A C UU - ca c cucuu cgacu GCAACGC CAAA GUC CUGUG cga acau u ||||| ||||| ||||||| |||| ||| ||||| ||| |||| gagaa gcuga CGUUGCG GUUU CAG GACAC guu ugua g aag --a C A U -- U -- a
Annotation confidence
Low
Do you think this miRNA is real?
Comments
The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2].
Genome context
chrX: 3006440-3006536 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cel-mir-249
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-249-3p
| Accession | MIMAT0000305 |
| Description | Caenorhabditis elegans cel-miR-249-3p mature miRNA |
| Sequence | 61 - UCACAGGACUUUUGAGCGUUGCC - 83 |
| Evidence |
experimental
cloned [1-2], Illumina [3-4] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-249-5p
| Accession | MIMAT0020338 |
| Description | Caenorhabditis elegans cel-miR-249-5p mature miRNA |
| Sequence | 17 - AGCAACGCACAAACGUCUUCUGUG - 40 |
| Evidence |
experimental
Illumina [4] |
References
|
