Accession
MI0000326
Description
Caenorhabditis elegans
cel-mir-250 precursor miRNA mir-250
Gene
family?
family?
RF00836;
mir-250
Literature search
1 open access papers mention cel-mir-250
(1 sentences)
(1 sentences)
Sequence
389816
reads,
3194
reads per million, 16 experiments
agggucuucggaccacgCCUUCAGUUGCCUCGUGAUCCGccaaacacaauaaauggacgAAUCACAGUCAACUGUUGGCauggugcucguacccauuuu
.((((....(.((((.(((..((((((.((.(((((.(((((...........))).)).))))))).))))))..))).)))).)....)))).....
.((((....(.((((.(((..((((((.((.(((((.(((((...........))).)).))))))).))))))..))).)))).)....)))).....
Structure
----a cuuc g c UU C C C - aaca
gggu g acca gCC CAGUUG CU GUGAU CG cca c
|||| | |||| ||| |||||| || ||||| || ||| a
ccca c uggu CGG GUCAAC GA CACUA gc ggu a
uuuua ugcu g a UU U - A a aaau
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2].
Genome context
chrV: 11769917-11770015 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-250
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-250-3p
| Accession | MIMAT0000306 |
| Description | Caenorhabditis elegans cel-miR-250-3p mature miRNA |
| Sequence | 60 - AAUCACAGUCAACUGUUGGC - 79 |
| Evidence |
experimental
Northern [1-2], PCR [1], Illumina [3,5], CLIPseq [4] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-250-5p
| Accession | MIMAT0020339 |
| Description | Caenorhabditis elegans cel-miR-250-5p mature miRNA |
| Sequence | 18 - CCUUCAGUUGCCUCGUGAUCCG - 39 |
| Evidence |
experimental
Illumina [5] |
| Database links |
|
