Stem-loop cel-mir-251

Accession

MI0000327

Description

Caenorhabditis elegans cel-mir-251 precursor miRNA mir-251

Gene
family

RF00837; mir-251

Literature search

2 open access papers mention cel-mir-251
(47 sentences)

Sequence

1471 reads, 18 reads per million, 13 experiments

acuuucaaugaccccuugUUAAGUAGUGGUGCCGCUCUUAuuagguugaaaaguaauaagaguaguucacuacuuaucaaggugaaauuugaaauuu
..((((((....((((((.((((((((((.((.((((((((((..........)))))))))).)))))))))))).))))).)....))))))...

Structure

-ac      ugac -     U          U  C          gguu 
   uuucaa    c ccuug UAAGUAGUGG GC GCUCUUAuua    g
   ||||||    | ||||| |||||||||| || ||||||||||     
   aaaguu    g ggaac auucaucacu ug ugagaauaau    a
uuu      uaaa u     u          -  a          gaaa 

Annotation confidence Low

Genome context

chrX: 11004728-11004824 [+]

Mature cel-miR-251

• Accession: MIMAT0000307
• Description: Caenorhabditis elegans cel-miR-251 mature miRNA
• Sequence: 19 - UUAAGUAGUGGUGCCGCUCUUA - 40
• Evidence: experimental ; Northern [1-2], PCR [1], Illumina [3], CLIPseq [4]

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


2. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


3. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


4. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179