Stem-loop cel-mir-254

Accession

MI0000330

Description

Caenorhabditis elegans cel-mir-254 precursor miRNA mir-254

Gene
family

RF00855; mir-254

Literature search

3 open access papers mention cel-mir-254
(12 sentences)

Sequence

8266 reads, 40 reads per million, 16 experiments

acuaugcauauugccgccUACAGAAGCAUAGAUUUCCACAaaccauucgagguguuugUGCAAAUCUUUCGCGACuguaggcggcgaacaugcaguuuuu
....(((((.(((((((((((((..((..((((((.((((((((.......).))))))).))))))...))..)))))))))))))..)))))......

Structure

--acua     -a             AA  -AU      C       - au 
      ugcau  uugccgccUACAG  GC   AGAUUU CACAaac c  u
      |||||  |||||||||||||  ||   |||||| ||||||| |  c
      acgua  agcggcggauguC  CG   UCUAAA GUguuug g  g
uuuuug     ca             AG  CUU      C       u ga 

Annotation confidence Medium

Genome context

chrX: 11333531-11333630 [-]

Mature cel-miR-254-3p

• Accession: MIMAT0000310
• Description: Caenorhabditis elegans cel-miR-254-3p mature miRNA
• Sequence: 59 - UGCAAAUCUUUCGCGAC - 75
• Evidence: experimental ; Northern [1-2], PCR [1], Illumina [3]

Mature cel-miR-254-5p

• Accession: MIMAT0031891
• Description: Caenorhabditis elegans cel-miR-254-5p mature miRNA
• Sequence: 19 - UACAGAAGCAUAGAUUUCCACA - 40
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


2. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


3. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54