Accession
MI0000361
Description
Drosophila melanogaster
dme-mir-278 precursor miRNA mir-278
Gene
family?
family?
RF00729;
mir-278
Literature search
6 open access papers mention dme-mir-278
(13 sentences)
(13 sentences)
Sequence
121023
reads,
4144
reads per million, 49 experiments
guaaugguacggugcgaCCGGAUGAUGGUUCACAACGACCgugucauuuaaacgggUCGGUGGGACUUUCGUCCGUUUguaacgccauuugucaacga
..((((((....(((((.(((((((.(((((.((.(((((.(((.......)))))))).))))))).))))))).)))))..)))))).........
..((((((....(((((.(((((((.(((((.((.(((((.(((.......)))))))).))))))).))))))).)))))..)))))).........
Structure
-------gu acgg C U A A g ca
aauggu ugcga CGGAUGA GGUUC CA CGACC ugu u
|||||| ||||| ||||||| ||||| || ||||| ||| u
uuaccg augUU GCCUGCU UCAGG GU GCUgg gca u
agcaacugu --ca U U - G - aa
Annotation confidence
High
Do you think this miRNA is real?
Comments
miR-278 was reported independently in references [1] and [2]. Computational prediction followed by northern blotting confirmed that the strand containing the predicted miR is predominantly expressed [1]. Reference [2] confirmed the 5' end of the excised miRNA by cloning and reported a length distribution of 20-22 nt with 22 nt the most commonly expressed.
Genome context
chr2R: 15657066-15657163 [+]
Database links
Mature dme-miR-278-3p
| Accession | MIMAT0000339 |
| Description | Drosophila melanogaster dme-miR-278-3p mature miRNA |
| Sequence | 57 - UCGGUGGGACUUUCGUCCGUUU - 78 |
| Evidence |
experimental
Northern [1-2], cloned [2], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
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Mature dme-miR-278-5p
| Accession | MIMAT0020805 |
| Description | Drosophila melanogaster dme-miR-278-5p mature miRNA |
| Sequence | 18 - CCGGAUGAUGGUUCACAACGACC - 40 |
| Evidence | not_experimental |
| Database links |
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References
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