Stem-loop dme-mir-282

Accession

MI0000367

Description

Drosophila melanogaster dme-mir-282 precursor miRNA mir-282

Gene
family

RF00724; mir-282

Literature search

6 open access papers mention dme-mir-282
(23 sentences)

Sequence

265588 reads, 21363 reads per million, 49 experiments

aguuuccuucuaaaucUAGCCUCUACUAGGCUUUGUCUGUgcauucgaaagccgaucagACAUAGCCUAUAAGAGGUUAGGuguaccaaggcgaaca
.((((((((....(((((((((((..((((((.((((((..(...........)..)))))).))))))..))))))))))).....)))).)))).

Structure

a    -    -cuaa           AC      U      Ug auuc 
 guuu ccuu     aucUAGCCUCU  UAGGCU UGUCUG  c    g
 |||| ||||     |||||||||||  |||||| ||||||  |    a
 caag ggaa     uGGAUUGGAGA  AUCCGA ACAgac  g    a
a    c    ccaug           AU      U      ua ccga 

Annotation confidence High

Genome context

chr3L: 3251022-3251118 [+]

Mature dme-miR-282-5p

• Accession: MIMAT0000346
• Description: Drosophila melanogaster dme-miR-282-5p mature miRNA
• Sequence: 17 - UAGCCUCUACUAGGCUUUGUCUGU - 40
• Evidence: experimental ; Northern [1], 454 [2-3], Illumina [3]

Mature dme-miR-282-3p

• Accession: MIMAT0020809
• Description: Drosophila melanogaster dme-miR-282-3p mature miRNA
• Sequence: 60 - ACAUAGCCUAUAAGAGGUUAGG - 81
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879


3. PubMed ID: 12844358
   Computational identification of Drosophila microRNA genes
   "Lai EC, Tomancak P, Williams RW, Rubin GM"
   "Genome Biol (2003) 4:R42