Stem-loop dme-mir-284

Accession

MI0000369

Description

Drosophila melanogaster dme-mir-284 precursor miRNA mir-284

Gene
family

RF01901; mir-284

Literature search

2 open access papers mention dme-mir-284
(2 sentences)

Sequence

209178 reads, 2069.0 reads per million, 48 experiments

guugcaguuCCUGGAAUUAAGUUGACUGUGUAGCcugugagggcaaggcuugaauaaugcuccugaaGUCAGCAACUUGAUUCCAGCAAUugcggcccga
(((((((((.((((((((((((((.(((...(((((((....)).)))))...................))))))))))))))))).)))))))))....

Structure

----         C              A   ----------------UGU     -  g 
    guugcaguu CUGGAAUUAAGUUG CUG                   AGCcu gu a
    ||||||||| |||||||||||||| |||                   ||||| ||  
    cggcguUAA GACCUUAGUUCAAC GAC                   ucgga cg g
agcc         C              -   UGaaguccucguaauaagu     a  g 

Annotation confidence High

Genome context

chr3R: 12551515-12551614 [-]

Mature dme-miR-284-5p

• Accession: MIMAT0020811
• Description: Drosophila melanogaster dme-miR-284-5p mature miRNA
• Sequence: 10 - CCUGGAAUUAAGUUGACUGUGUAGC - 34
• Evidence: not_experimental

Mature dme-miR-284-3p

• Accession: MIMAT0000348
• Description: Drosophila melanogaster dme-miR-284-3p mature miRNA
• Sequence: 68 - GUCAGCAACUUGAUUCCAGCAAU - 90
• Evidence: experimental ; Northern [1], 454 [2-3], Illumina [3]

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879


3. PubMed ID: 12844358
   Computational identification of Drosophila microRNA genes
   "Lai EC, Tomancak P, Williams RW, Rubin GM"
   "Genome Biol (2003) 4:R42