Accession
MI0000376
Description
Drosophila melanogaster
dme-mir-210 precursor miRNA
Literature search
8 open access papers mention dme-mir-210
(29 sentences)
(29 sentences)
Sequence
236219
reads,
2239
reads per million, 48 experiments
aaaggugcuuauugcAGCUGCUGGCCACUGCACAAGAUuagacuuaagacuCUUGUGCGUGUGACAGCGGCUAUuguaagaggccauagaagcaacagcc
...(((.(((((...((((((((..((((((((((((((........)).))))))))).))).))))))))...)))))..)))......((....)).
...(((.(((((...((((((((..((((((((((((((........)).))))))))).))).))))))))...)))))..)))......((....)).
Structure
------------aaa -g ugc GC - - aga
ggu cuuau AGCUGCUG CAC UGCACAAGA Uu c
||| ||||| |||||||| ||| ||||||||| ||
ccg gaaug UCGGCGAC GUG GCGUGUUCu ag u
ccgacaacgaagaua ga uUA -A U c aau
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
This sequence is computationally predicted based on conservation in D. pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed.
Genome context
chrX: 18128219-18128318 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-210
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-210-3p
| Accession | MIMAT0000355 |
| Description | Drosophila melanogaster dme-miR-210-3p mature miRNA |
| Sequence | 52 - CUUGUGCGUGUGACAGCGGCUAU - 74 |
| Evidence |
experimental
cloned [2], 454 [3-4], Illumina [4] |
| Database links |
|
Mature dme-miR-210-5p
| Accession | MIMAT0020816 |
| Description | Drosophila melanogaster dme-miR-210-5p mature miRNA |
| Sequence | 16 - AGCUGCUGGCCACUGCACAAGAU - 38 |
| Evidence | not_experimental |
| Database links |
|
References
|
