miRBase entry: dme-mir-307a

Stem-loop dme-mir-307a


Accession
MI0000418
Description
Drosophila melanogaster dme-mir-307a precursor miRNA mir-67
Gene
family?
RF00844; mir-67

Literature search
6 open access papers mention dme-mir-307a
(53 sentences)

Sequence

21448 reads, 1366 reads per million, 49 experiments
ugucuugcuuugACUCACUCAACCUGGGUGUGAUguuauuucgauaugguauccaUCACAACCUCCUUGAGUGAGCGAuagcaggaca
((((((((((((.(((((((((...((.(((((((.((((.......))))..))))))).))...)))))))))))).)))))))))

Structure
         -   A         CCU  G       -u    uc 
ugucuugcu uug CUCACUCAA   GG UGUGAUg  uauu  g
||||||||| ||| |||||||||   || |||||||  ||||  a
acaggacga AGC GAGUGAGUU   CC ACACUac  augg  u
         u   -         CCU  A       cu    ua 


Annotation confidence High
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Genome context
chr2R: 9621251-9621338 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-307a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-307a-3p

Accession MIMAT0000398
Description Drosophila melanogaster dme-miR-307a-3p mature miRNA
Sequence 56 - UCACAACCUCCUUGAGUGAGCGA - 78
Evidence experimental
cloned [1], 454 [2-3], Illumina [3]
Database links
Predicted targets

Mature dme-miR-307a-5p

Accession MIMAT0020832
Description Drosophila melanogaster dme-miR-307a-5p mature miRNA
Sequence 13 - ACUCACUCAACCUGGGUGUGAU - 34
Evidence not_experimental
Database links

References

  1. PubMed ID: 12919683
    The small RNA profile during Drosophila melanogaster development
    "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
    "Dev Cell (2003) 5:337-350

  2. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  3. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879