Stem-loop dme-mir-31a

Accession

MI0000420

Description

Drosophila melanogaster dme-mir-31a precursor miRNA

Literature search

8 open access papers mention dme-mir-31a
(35 sentences)

Sequence

1154151 reads, 6584 reads per million, 49 experiments

uccguugguaaauUGGCAAGAUGUCGGCAUAGCUGAcguugaaaagcgauuuugaagagCGCUAUGCUGCAUCUAGUCAGUuguucaaugga
((((((((..(((((((.(((((.(((((((((.(...((.((((....)))).))...))))))))))))))).)))))))..))))))))

Structure

        ua       A     U         U Acg  g    g 
uccguugg  aauUGGC AGAUG CGGCAUAGC G   uu aaaa c
||||||||  ||||||| ||||| ||||||||| |   || ||||  
agguaacu  uUGACUG UCUAC GUCGUAUCG C   aa uuuu g
        ug       A     -         - gag  g    a 

Annotation confidence High

Genome context

chr2R: 17783795-17783886 [-]

Mature dme-miR-31a-5p

• Accession: MIMAT0000400
• Description: Drosophila melanogaster dme-miR-31a-5p mature miRNA
• Sequence: 14 - UGGCAAGAUGUCGGCAUAGCUGA - 36
• Evidence: experimental ; cloned [1], 454 [2-3], Illumina [3]

Mature dme-miR-31a-3p

• Accession: MIMAT0020834
• Description: Drosophila melanogaster dme-miR-31a-3p mature miRNA
• Sequence: 60 - CGCUAUGCUGCAUCUAGUCAGU - 81
• Evidence: not_experimental

References

1. PubMed ID: 12919683
   The small RNA profile during Drosophila melanogaster development
   "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
   "Dev Cell (2003) 5:337-350


2. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


3. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879