Accession
MI0000425
Description
Drosophila melanogaster
dme-mir-313 precursor miRNA mir-310
Gene
family?
family?
RF04249;
mir-310
Literature search
6 open access papers mention dme-mir-313
(19 sentences)
(19 sentences)
Sequence
10808
reads,
1036
reads per million, 47 experiments
auuuucUGCUGCGGAUGGGGGCAGUACUguuuuuuuaacauugagUAUUGCACUUUUCACAGCCCGAaaau
((((((.((((.(((.((..((((((((...............)))))))).)).))).))))..))))))
((((((.((((.(((.((..((((((((...............)))))))).)).))).))))..))))))
Structure
-U C U GG guuuuu
auuuuc GCUG GGA GG GCAGUACU u
|||||| |||| ||| || |||||||| u
uaaaAG CGAC CUU UC CGUUAUga a
CC A U -A guuaca
Annotation confidence
High
Do you think this miRNA is real?
Comments
miR-313 was predicted based on conservation of clustering with miR-310 (MIR:MI0000422), miR-311 (MIR:MI0000423) and miR-312 (MIR:MI0000424). Its expression has not been verified.
Genome context
chr2R: 20584190-20584260 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from dme-mir-313
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-313-3p
| Accession | MIMAT0000405 |
| Description | Drosophila melanogaster dme-miR-313-3p mature miRNA |
| Sequence | 46 - UAUUGCACUUUUCACAGCCCGA - 67 |
| Evidence |
experimental
454 [2-3], Illumina [3] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-313-5p
| Accession | MIMAT0020839 |
| Description | Drosophila melanogaster dme-miR-313-5p mature miRNA |
| Sequence | 7 - UGCUGCGGAUGGGGGCAGUACU - 28 |
| Evidence | not_experimental |
| Database links |
|
References
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