Accession
MI0000427
Description
Drosophila melanogaster
dme-mir-315 precursor miRNA mir-315
Gene
family?
family?
RF00717;
mir-315
Literature search
5 open access papers mention dme-mir-315
(10 sentences)
(10 sentences)
Sequence
246620
reads,
3075
reads per million, 46 experiments
cacuuauauaaUUUUGAUUGUUGCUCAGAAAGCccucauuguuuaccaguuggCUUUCGAGCAAUAAUUGAAACCagauaagug
(((((((....(((((((((((((((.(((((((...((((.....)))).))))))))))))))))))))))....)))))))
(((((((....(((((((((((((((.(((((((...((((.....)))).))))))))))))))))))))))....)))))))
Structure
auaa A cuc u
cacuuau UUUUGAUUGUUGCUC GAAAGCc auug u
||||||| ||||||||||||||| ||||||| |||| u
gugaaua AAAGUUAAUAACGAG CUUUCgg ugac a
gaCC - --u c
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
Lai et al. predicted this sequence based on conservation in D. pseudoobscura, but did not verify expression [2]. Aravin et al. describe identification and mapping of the ends of the excised sequence by cloning [1].
Genome context
chr3L: 18860971-18861054 [+]
Database links
Mature dme-miR-315-5p
| Accession | MIMAT0000407 |
| Description | Drosophila melanogaster dme-miR-315-5p mature miRNA |
| Sequence | 12 - UUUUGAUUGUUGCUCAGAAAGC - 33 |
| Evidence |
experimental
cloned [1], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-315-3p
| Accession | MIMAT0020841 |
| Description | Drosophila melanogaster dme-miR-315-3p mature miRNA |
| Sequence | 54 - CUUUCGAGCAAUAAUUGAAACC - 75 |
| Evidence | not_experimental |
| Database links |
|
References
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