Stem-loop cbr-mir-34

Accession

MI0000494

Description

Caenorhabditis briggsae cbr-mir-34 precursor miRNA mir-34

Gene
family

RF00456; mir-34

Literature search

2 open access papers mention cbr-mir-34
(24 sentences)

Sequence

2231 reads, 311.0 reads per million, 3 experiments

aagcacucauggucgugAGGCAGUGUGGUUAGCUGGUUGcauacacagguugacaACGGCUACCUUCACUGCCACCCcgaacauguaguccuc
.((.(((((((.(((...(((((((.((.((((((.(((((..(...)..)).))))))))).)).)))))))....))).)))).))).)).

Structure

a  c   -    g   -ugA       U  U      G   -  ua a 
 ag acu caug ucg    GGCAGUG GG UAGCUG UUG ca  c  
 || ||| |||| |||    ||||||| || |||||| ||| ||  | c
 uc uga guac agc    CCGUCAC UC AUCGGC Aac gu  g  
c  c   u    a   CCCA       U  C      -   a  ug a 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrX: 3832359-3832451 [+]

Mature cbr-miR-34-5p

• Accession: MIMAT0000466
• Description: Caenorhabditis briggsae cbr-miR-34-5p mature miRNA
• Sequence: 18 - AGGCAGUGUGGUUAGCUGGUUG - 39
• Evidence: not_experimental

Mature cbr-miR-34-3p

• Accession: MIMAT0053513
• Description: Caenorhabditis briggsae cbr-miR-34-3p mature miRNA
• Sequence: 56 - ACGGCUACCUUCACUGCCACCC - 77
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862