Stem-loop mmu-mir-208a

Accession

MI0000555

Symbol

MGI: Mir208a

Description

Mus musculus mmu-mir-208a precursor miRNA mir-208

Gene
family

RF00749; mir-208

Literature search

81 open access papers mention mmu-mir-208a
(361 sentences)

Sequence

1015 reads, 53 reads per million, 31 experiments

uuccuuugacggguGAGCUUUUGGCCCGGGUUAUACcugacacucacguAUAAGACGAGCAAAAAGCUUGUuggucagaggag
.(((((((((.(((((((((((.((.((..((((((.(((...))).))))))..)).)).))))))))))).))))))))).

Structure

u         g           G  C  GG      c   c 
 uccuuugac gguGAGCUUUU GC CG  UUAUAC uga  
 ||||||||| ||||||||||| || ||  |||||| ||| a
 aggagacug uUGUUCGAAAA CG GC  AAUAug acu  
g         g           A  A  AG      c   c 

Annotation confidence High

Genome context

chr14: 54949060-54949142 [-]

Mature mmu-miR-208a-5p

• Accession: MIMAT0017014
• Description: Mus musculus mmu-miR-208a-5p mature miRNA
• Sequence: 15 - GAGCUUUUGGCCCGGGUUAUAC - 36
• Evidence: experimental ; Illumina [3]

Mature mmu-miR-208a-3p

• Accession: MIMAT0000520
• Description: Mus musculus mmu-miR-208a-3p mature miRNA
• Sequence: 50 - AUAAGACGAGCAAAAAGCUUGU - 71
• Evidence: experimental ; cloned [1-2], Illumina [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12554859
   New microRNAs from mouse and human
   "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
   "RNA (2003) 9:175-179


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009