Stem-loop mmu-mir-98

Accession

MI0000586

Symbol

MGI: Mir98

Description

Mus musculus mmu-mir-98 precursor miRNA

Literature search

61 open access papers mention mmu-mir-98
(616 sentences)

Sequence

168692 reads, 665 reads per million, 106 experiments

cugcacaugcuggggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuuaggccccaguaagaagauaaCUAUACAACUUACUACUUUCCUugguguguggcau
.((((((((((((((.(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))))))))))))).))).

Structure

c   -           U                 U    ---------      aggg 
 ugc acaugcugggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||| ||||||||||| ||||||||||||||||| ||||         ||||||    u
 acg ugugugguUCC UUUCAUCAUUCAACAUA Caau         accccg    u
u   g           -                 U    agaagaaug      gauu 

Annotation confidence Medium

Genome context

chrX: 151913214-151913321 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-98

Mature mmu-miR-98-5p

• Accession: MIMAT0000545
• Description: Mus musculus mmu-miR-98-5p mature miRNA
• Sequence: 16 - UGAGGUAGUAAGUUGUAUUGUU - 37
• Evidence: experimental ; cloned [1], Illumina [2,4]

Mature mmu-miR-98-3p

• Accession: MIMAT0017023
• Description: Mus musculus mmu-miR-98-3p mature miRNA
• Sequence: 74 - CUAUACAACUUACUACUUUCCU - 95
• Evidence: experimental ; 454 [3], Illumina [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 20668074
   Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
   "Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H"
   "J Virol (2010) 84:10266-10275