Accession
MI0000606
Description
Rattus norvegicus
rno-mir-330 precursor miRNA
Literature search
14 open access papers mention rno-mir-330
(35 sentences)
(35 sentences)
Sequence
189120
reads,
143
reads per million, 491 experiments
acccuuuggcgaucucugccUCUCUGGGCCUGUGUCUUAGGCucuucaagaucuaacgaGCAAAGCACAGGGCCUGCAGAGAgguagcgcucugcuc
.......(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).))).
.......(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).))).
Structure
acccuuu - u u -- - U AG uucaa
ggc ga c cugccUCUCUG GGCC UGUG CUU GCuc g
||| || | ||||||||||| |||| |||| ||| |||| a
ucg cu g gauggAGAGAC CCGG ACAC GAA CGag u
------c u c c GU G - -A caauc
Annotation confidence
High
Do you think this miRNA is real?
Comments
The mature miRNA originating from the 3' arm reported in [1] contains an extra 3' A residue, which conflicts with the precursor sequence shown here. Landgraf et al. show that the 5' miRNA is the predominant one [2]. The 3' mature sequence is renamed miR-300* here.
Genome context
chr1: 80092681-80092777 [+]
Database links
Mature rno-miR-330-5p
| Accession | MIMAT0004641 |
| Description | Rattus norvegicus rno-miR-330-5p mature miRNA |
| Sequence | 21 - UCUCUGGGCCUGUGUCUUAGGC - 42 |
| Evidence |
experimental
cloned [2], SOLiD [3] |
Mature rno-miR-330-3p
| Accession | MIMAT0000568 |
| Description | Rattus norvegicus rno-miR-330-3p mature miRNA |
| Sequence | 60 - GCAAAGCACAGGGCCUGCAGAGA - 82 |
| Evidence |
experimental
cloned [1], SOLiD [3] |
References
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