Stem-loop rno-mir-338

Accession

MI0000618

Description

Rattus norvegicus rno-mir-338 precursor miRNA

Literature search

17 open access papers mention rno-mir-338
(158 sentences)

Sequence

885138 reads, 783 reads per million, 485 experiments

uccccAACAAUAUCCUGGUGCUGAGUGggugcacagugacUCCAGCAUCAGUGAUUUUGUUGAaga
....((((((.(((((((((((((((.(........).))).))))))))).))).))))))....

Structure

uccc      U   -         -   G gug 
    cAACAA AUC CUGGUGCUG AGU g   c
    |||||| ||| ||||||||| ||| |    
    GUUGUU UAG GACUACGAC Uca u   a
agaA      U   U         C   g gac 

Annotation confidence Medium

Genome context

chr10: 109195251-109195316 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-338

Mature rno-miR-338-5p

• Accession: MIMAT0004646
• Description: Rattus norvegicus rno-miR-338-5p mature miRNA
• Sequence: 6 - AACAAUAUCCUGGUGCUGAGUG - 27
• Evidence: experimental ; cloned [4], SOLiD [5]

Mature rno-miR-338-3p

• Accession: MIMAT0000581
• Description: Rattus norvegicus rno-miR-338-3p mature miRNA
• Sequence: 41 - UCCAGCAUCAGUGAUUUUGUUGA - 63
• Evidence: experimental ; cloned [1-4], Northern [1], SOLiD [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


4. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


5. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68