Accession
MI0000754
Description
Caenorhabditis elegans
cel-mir-355 precursor miRNA mir-355
Gene
family?
family?
RF00797;
mir-355
Literature search
2 open access papers mention cel-mir-355
(22 sentences)
(22 sentences)
Sequence
3914
reads,
26
reads per million, 12 experiments
aauaaugucaagaauugaauggUUUGUUUUAGCCUGAGCUAUGagucaucggaauaugcaUAGCUUCUUGCUAAAACAUGCCaaucaaucuuaauugacgaaguuuuuga
......(((((..(((((.((((.(((((((((..((((((((..((....)).....)))))).))..))))))))).)))).))))).....)))))...........
......(((((..(((((.((((.(((((((((..((((((((..((....)).....)))))).))..))))))))).)))).))))).....)))))...........
Structure
-----aauaau ---ga a U CU - ---ag a
gucaa auuga uggU UGUUUUAGC GA GCUAUG uc u
||||| ||||| |||| ||||||||| || |||||| ||
caguu uaacu aCCG ACAAAAUCG CU CGAUac ag c
aguuuuugaag aauuc a U UU U guaua g
Annotation confidence
Low
Do you think this miRNA is real?
Comments
This miRNA was predicted by computational analysis of C. elegans and C. briggsae, and expression of the mature microRNA confirmed by PCR amplification, cloning and sequencing [1]. The 5' end of the mature sequence was mapped by PCR, and the 3' end confirmed later [2].
Genome context
chrII: 11833536-11833645 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-355
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-355-5p
| Accession | MIMAT0000697 |
| Description | Caenorhabditis elegans cel-miR-355-5p mature miRNA |
| Sequence | 23 - UUUGUUUUAGCCUGAGCUAUG - 43 |
| Evidence |
experimental
cloned [1-2], PCR [1], Illumina [3] |
| Database links |
|
| Predicted targets |
|
Mature cel-miR-355-3p
| Accession | MIMAT0031895 |
| Description | Caenorhabditis elegans cel-miR-355-3p mature miRNA |
| Sequence | 61 - UAGCUUCUUGCUAAAACAUGCC - 82 |
| Evidence | not_experimental |
References
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