Stem-loop rno-mir-30e

Accession

MI0000867

Description

Rattus norvegicus rno-mir-30e precursor miRNA

Literature search

59 open access papers mention rno-mir-30e
(268 sentences)

Sequence

9811048 reads, 10150 reads per million, 515 experiments

gggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGcuguaagguguugagaggagCUUUCAGUCGGAUGUUUACAGCggcaggcugcca
.((((((((..(((.((((((((((((..(((((((((((................))))))))))))))))))))))).))))))))))).

Structure

g        uu   a            UU           guaaggu 
 ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGcu       g
 ||||||||  ||| ||||||||||||  |||||||||||        
 ccgucgga  cgg GACAUUUGUAGG  CUGACUUUCga       u
a        --   C            --           ggagagu 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

chr5: 139702872-139702963 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-30e

Mature rno-miR-30e-5p

• Accession: MIMAT0000805
• Description: Rattus norvegicus rno-miR-30e-5p mature miRNA
• Sequence: 17 - UGUAAACAUCCUUGACUGGAAG - 38
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-30e-3p

• Accession: MIMAT0004720
• Description: Rattus norvegicus rno-miR-30e-3p mature miRNA
• Sequence: 59 - CUUUCAGUCGGAUGUUUACAGC - 80
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249