Stem-loop rno-mir-96

Accession

MI0000881

Description

Rattus norvegicus rno-mir-96 precursor miRNA

Literature search

25 open access papers mention rno-mir-96
(127 sentences)

Sequence

20327 reads, 27 reads per million, 399 experiments

ccaguaccaucugcuuggccgauUUUGGCACUAGCACAUUUUUGCUugugucucuccgcucugagCAAUCAUGUGCAGUGCCAAUAUgggaaaagcgggcugcugc
.(((((...(((((((..((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))..))))))).))))).

Structure

c     cca       gg  g  U        A      UU      ---   uc 
 cagua   ucugcuu  cc au UUGGCACU GCACAU  UUGCUu   gug  u
 |||||   |||||||  || || |||||||| ||||||  ||||||   |||   
 gucgu   gggcgaa  gg UA AACCGUGA CGUGUA  AACgag   cgc  c
c     --c       aa  g  U        -      CU      ucu   cu 

Annotation confidence High

Genome context

chr4: 57463366-57463471 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-96

Mature rno-miR-96-5p

• Accession: MIMAT0000818
• Description: Rattus norvegicus rno-miR-96-5p mature miRNA
• Sequence: 24 - UUUGGCACUAGCACAUUUUUGCU - 46
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-96-3p

• Accession: MIMAT0017110
• Description: Rattus norvegicus rno-miR-96-3p mature miRNA
• Sequence: 66 - CAAUCAUGUGCAGUGCCAAUAU - 87
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249