Stem-loop rno-mir-146a

Accession

MI0000919

Description

Rattus norvegicus rno-mir-146a precursor miRNA

Literature search

107 open access papers mention rno-mir-146a
(1159 sentences)

Sequence

176571 reads, 3964 reads per million, 496 experiments

uguguauccucagcucUGAGAACUGAAUUCCAUGGGUUauagcaaugucagACCUGUGAAGUUCAGUUCUUUagcugggauagcucuaucgucau
.((.(((((.(((((..((((((((((((.(((((((((((....)))..)))))))).)))))))))))).))))))))))))...........

Structure

----------u  g     u     cU            C        --   g 
           gu uaucc cagcu  GAGAACUGAAUU CAUGGGUU  aua c
           || ||||| |||||  |||||||||||| ||||||||  |||  
           cg auagg gucga  UUCUUGACUUGA GUGUCCAg  ugu a
uacugcuaucu  -     -     -U            A        ac   a 

Annotation confidence High

Genome context

chr10: 28962476-28962570 [-]

Mature rno-miR-146a-5p

• Accession: MIMAT0000852
• Description: Rattus norvegicus rno-miR-146a-5p mature miRNA
• Sequence: 17 - UGAGAACUGAAUUCCAUGGGUU - 38
• Evidence: experimental ; cloned [1-3], SOLiD [4]

Mature rno-miR-146a-3p

• Accession: MIMAT0017132
• Description: Rattus norvegicus rno-miR-146a-3p mature miRNA
• Sequence: 52 - ACCUGUGAAGUUCAGUUCUUU - 72
• Evidence: experimental ; SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68