Stem-loop rno-mir-150

Accession

MI0000920

Description

Rattus norvegicus rno-mir-150 precursor miRNA

Literature search

34 open access papers mention rno-mir-150
(150 sentences)

Sequence

469075 reads, 485 reads per million, 489 experiments

cuucucaaggcccugUCUCCCAACCCUUGUACCAGUGcugugccucagaccCUGGUACAGGCCUGGGGGAcagggacuuggggac
.((((((((.((((((((((((..(((.(((((((.((((.....))).).))))))))))..)))))))))))).)))))))).

Structure

c        g            AC   U       U -   u 
 uucucaag cccugUCUCCCA  CCU GUACCAG G cug g
 |||||||| ||||||||||||  ||| ||||||| | ||| c
 agggguuc gggacAGGGGGU  GGA CAUGGUC c gac c
c        a            CC   -       c a   u 

Annotation confidence High

Genome context

chr1: 101115974-101116058 [+]

Mature rno-miR-150-5p

• Accession: MIMAT0000853
• Description: Rattus norvegicus rno-miR-150-5p mature miRNA
• Sequence: 16 - UCUCCCAACCCUUGUACCAGUG - 37
• Evidence: experimental ; cloned [1-3], SOLiD [4]

Mature rno-miR-150-3p

• Accession: MIMAT0017133
• Description: Rattus norvegicus rno-miR-150-3p mature miRNA
• Sequence: 52 - CUGGUACAGGCCUGGGGGA - 70
• Evidence: experimental ; SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68