Stem-loop rno-mir-181c

Accession

MI0000924

Description

Rattus norvegicus rno-mir-181c precursor miRNA

Literature search

36 open access papers mention rno-mir-181c
(207 sentences)

Sequence

2011467 reads, 1797 reads per million, 504 experiments

agaacuugccaaggguuugggggAACAUUCAACCUGUCGGUGAGUuugggcagcucagacaaACCAUCGACCGUUGAGUGGACCccgaggccuggaacugccaccc
........(((.((.(((((((...((((((((..(((((((.(((((...........)))))))))))).))))))))..))))))).)))))...........

Structure

---agaacuug   a  g       gAA        CU       A     ggca 
           cca gg uuugggg   CAUUCAAC  GUCGGUG GUuug    g
           ||| || |||||||   ||||||||  ||||||| |||||    c
           ggu cc gagccCC   GUGAGUUG  CAGCUAC CAaac    u
cccaccgucaa   -  g       -AG        -C       -     agac 

Annotation confidence High

Genome context

chr19: 25290211-25290316 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-181c

Mature rno-miR-181c-5p

• Accession: MIMAT0000857
• Description: Rattus norvegicus rno-miR-181c-5p mature miRNA
• Sequence: 24 - AACAUUCAACCUGUCGGUGAGU - 45
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-181c-3p

• Accession: MIMAT0017137
• Description: Rattus norvegicus rno-miR-181c-3p mature miRNA
• Sequence: 63 - ACCAUCGACCGUUGAGUGGACC - 84
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249