Stem-loop rno-mir-194-2

Accession

MI0000938

Description

Rattus norvegicus rno-mir-194-2 precursor miRNA

Literature search

21 open access papers mention rno-mir-194-2
(131 sentences)

Sequence

1893432 reads, 1967 reads per million, 500 experiments

uggcucccacccccUGUAACAGCAACUCCAUGUGGAagugcccacugauuCCAGUGGGGCUGCUGUUAUCUgggguggaggcugg
.((((.(((((((..(((((((((.((((((.(((((...........))))))))))).)))))))))..))))))).))))..

Structure

-u    c       cU         A      G     gugc 
  ggcu ccacccc  GUAACAGCA CUCCAU UGGAa    c
  |||| |||||||  ||||||||| |||||| |||||    c
  ucgg ggugggg  UAUUGUCGU GGGGUG ACCuu    a
gg    a       UC         C      -     aguc 

Annotation confidence High

Genome context

chr1: 221634786-221634870 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-194-2

Mature rno-miR-194-5p

• Accession: MIMAT0000869
• Description: Rattus norvegicus rno-miR-194-5p mature miRNA
• Sequence: 15 - UGUAACAGCAACUCCAUGUGGA - 36
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-194-3p

• Accession: MIMAT0017148
• Description: Rattus norvegicus rno-miR-194-3p mature miRNA
• Sequence: 51 - CCAGUGGGGCUGCUGUUAUCU - 71
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249