Stem-loop rno-mir-211

Accession

MI0000951

Description

Rattus norvegicus rno-mir-211 precursor miRNA

Literature search

4 open access papers mention rno-mir-211
(8 sentences)

Sequence

2955 reads, 13 reads per million, 250 experiments

cagcuuggaccugugaccucugggcUUCCCUUUGUCAUCCUUUGCCUaggccucugaguggGGCAAGGACAGCAAAGGGGGgcucaguggucaccucuacugcaga
..((.((((...((((((.((((((((((((((((..(((((.((((..((......)).)))))))))..)))))))))))))))).)))))).))))..))...

Structure

-ca  -u    ccu      u                CA     U    ag  cu 
   gc  ugga   gugacc cugggcUUCCCUUUGU  UCCUU GCCU  gc  c
   ||  ||||   |||||| ||||||||||||||||  ||||| ||||  ||   
   cg  aucu   cacugg gacucgGGGGGAAACG  AGGAA CGGg  ug  u
aga  uc    --c      u                AC     -    -g  ag 

Annotation confidence Not enough data

Genome context

chr1: 125042119-125042224 [+]

Mature rno-miR-211-5p

• Accession: MIMAT0000882
• Description: Rattus norvegicus rno-miR-211-5p mature miRNA
• Sequence: 26 - UUCCCUUUGUCAUCCUUUGCCU - 47
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-211-3p

• Accession: MIMAT0017157
• Description: Rattus norvegicus rno-miR-211-3p mature miRNA
• Sequence: 62 - GGCAAGGACAGCAAAGGGGG - 81
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249