Stem-loop rno-mir-214

Accession

MI0000954

Description

Rattus norvegicus rno-mir-214 precursor miRNA

Literature search

59 open access papers mention rno-mir-214
(523 sentences)

Sequence

52850 reads, 84 reads per million, 469 experiments

guccuggauggacAGAGUUGUCAUGUGUCUgccugucuacacuugcugugcagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGucacaugacaacccagccu
((((.....)))).(.(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))).).....

Structure

guccuggauggacA A           U          aca            aacau 
              G GUUGUCAUGUG CUgccugucu   cuugcugugcag     c
              | ||||||||||| ||||||||||   ||||||||||||     c
              c caacaguacac GACGGACAGA   GGACGACAuguc     g
---------uccga c           u          CAC            cacuc 

Annotation confidence High

Genome context

chr13: 80130905-80131014 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-214

Mature rno-miR-214-5p

• Accession: MIMAT0017159
• Description: Rattus norvegicus rno-miR-214-5p mature miRNA
• Sequence: 14 - AGAGUUGUCAUGUGUCU - 30
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-214-3p

• Accession: MIMAT0000885
• Description: Rattus norvegicus rno-miR-214-3p mature miRNA
• Sequence: 71 - ACAGCAGGCACAGACAGGCAG - 91
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249